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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6726146_6726442_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6726146 - 6726442
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAGC
5'SS Class:
major
3'SS Sequence:
CTTGCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
CTGCACTGAGCT
Flanking Amino Acid:
PLEVPYGVTQVTELWEEGPS
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
65.9
40.1
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
78.7
0.65
0.9
72.5
37.6
Minor 5ss
27
-2.6
3
34.1
41.6
Minor BPS
46.3
-0.2
1.9
63.63
45.9

Associated Gene:

Gene:
ERAL1
Ensembl Gene ID:
ENSAPLG00000014894
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015544
6719075 - 6726957
7883