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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6726524_6726834_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6726524 - 6726834
Intron Length:
311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATACAG
Flanking Amino Acid:
NLVVPRKSHMMMLIGKRGTV
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
100
1.24
0.5
100
0
Major PPT
76
0.58
1
69.6
40.8
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
46.9
-0.3
2
58.06
43.2

Associated Gene:

Gene:
ERAL1
Ensembl Gene ID:
ENSAPLG00000014894
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015544
6719075 - 6726957
7883