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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6735557_6735846_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6735557 - 6735846
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
TTGCCCTCAGCT
Flanking Amino Acid:
EVFAWGRGDNGRLGLGTLEC
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
75.3
0.57
0.9
69.3
36.9
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
58.2
0.34
1.8
78.19
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016169
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016875
6728252 - 6739076
10825