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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6735998_6736204_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6735998 - 6736204
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
CAGCTCTCAGCT
Flanking Amino Acid:
KNQILACGSNRCNKLGLDQI
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.3
37.4
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
27.1
-2.6
3.7
36.6
47.9
Minor BPS
46
-0.2
1.8
58.55
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016169
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016875
6728252 - 6739076
10825