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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6742964_6745349_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6742964 - 6745349
Intron Length:
2386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCTGCCTGACCC
Flanking Amino Acid:
FCDTCLQEFLSEGVFKCPED
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
48.5
-0.1
1.9
58.45
46.5

Associated Gene:

Gene:
TRAF4
Ensembl Gene ID:
ENSAPLG00000023865
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017531
6742821 - 6748255
5435