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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6745402_6745726_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6745402 - 6745726
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CGTTGCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGTTGCCCAACA
Flanking Amino Acid:
EDQLPLDYAKIYPDPELEVQ
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
65.7
0.35
1
58.9
37.1
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
45.7
-0.3
2.2
61.2
44.5

Associated Gene:

Gene:
TRAF4
Ensembl Gene ID:
ENSAPLG00000023865
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017531
6742821 - 6748255
5435