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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6745832_6745922_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6745832 - 6745922
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTGCGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCCCCTCTGACC
Flanking Amino Acid:
RWSGLIKHLQVHLGTCAFNV
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
64.4
0.33
0.9
53.7
36.6
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
46.7
-0.2
1.7
51.31
40.3

Associated Gene:

Gene:
TRAF4
Ensembl Gene ID:
ENSAPLG00000023865
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017531
6742821 - 6748255
5435