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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6746085_6746278_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6746085 - 6746278
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCACC
5'SS Class:
major
3'SS Sequence:
CTGCGGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TGGTTGGTGACG
Flanking Amino Acid:
ATDFTGEAFEGHQGTCPQES
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
40.2
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
63.7
0.31
1
53.4
41.5
Minor 5ss
33.8
-1.8
3.1
43.2
44.2
Minor BPS
41.1
-0.8
2.6
50.02
44.6

Associated Gene:

Gene:
TRAF4
Ensembl Gene ID:
ENSAPLG00000023865
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017531
6742821 - 6748255
5435