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Intron Name: Anas_platyrhynchos_platyrhynchos_20_6746675_6747153_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6746675 - 6747153

Intron Length:

479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

GCCGTCCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

CCCCGCTGACGT

Flanking Amino Acid:

PFKEAGCKHRCPKLAMGRHL

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

76.2

39.9

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

65.2

0.34

0.9

57.7

33.3

Minor 5ss

35.9

-1.6

3.3

40.9

45.3

Minor BPS

36.2

-0.9

2.1

45.08

Associated Gene:

Gene:

TRAF4

Ensembl Gene ID:

ENSAPLG00000023865

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017531

6742821 - 6748255

5435