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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6756759_6770083_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6756759 - 6770083
Intron Length:
13325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CATTGATGAATT
Flanking Amino Acid:
MCSWLLREVGDTTQKMRSA
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
27.7
Major BPS
76.2
0.65
1
67
39.8
Major PPT
81.2
0.7
0.7
76.4
25.6
Minor 5ss
32.8
-2
3
39.5
45.9
Minor BPS
47.1
-0.1
2.1
67.19
43.5

Associated Gene:

Gene:
FAM222B
Ensembl Gene ID:
ENSAPLG00000027820
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046542
6753715 - 6770111
16397