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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6769_7034_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6769 - 7034
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGA
5'SS Class:
major
3'SS Sequence:
CCAATGTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TGTGAGTTAACA
Flanking Amino Acid:
VDCQFPLDCPVQDVWVHEDE
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
64
42.4
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
66.5
0.37
1
56.8
43
Minor 5ss
27.2
-2.6
3.6
37.6
47.2
Minor BPS
49.9
-0
2.3
69.03
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024958
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020589
5055 - 8928
3874