Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6824405_6825987_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6824405 - 6825987

Intron Length:

1583

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TCCCTCGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

GTATCTTTATTC

Flanking Amino Acid:

GKHACIFYDENTKHYELLNY

Intron Amino Acid Position:

764

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.4

29.1

Major BPS

83.9

0.84

73.9

41.3

Major PPT

78.9

0.65

0.8

32.6

Minor 5ss

28.5

-2.5

35.5

41.2

Minor BPS

61.4

0.34

1.6

67.74

38.1

Associated Gene:

Gene:

PHF12

Ensembl Gene ID:

ENSAPLG00000015321

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019246

6822670 - 6838722

16053

ENSAPLT00000015990

6823670 - 6838774

15105