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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6828391_6829191_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6828391 - 6829191
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TGTTTGTTAACA
Flanking Amino Acid:
SSSLKAFVDGEIEINMLDEQ
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
29
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
77.8
0.62
1
73.3
40.9
Minor 5ss
36.7
-1.5
3
52.2
44.4
Minor BPS
66.5
0.51
2
79.59
36.6

Associated Gene:

Gene:
PHF12
Ensembl Gene ID:
ENSAPLG00000015321
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019246
6822670 - 6838722
16053
ENSAPLT00000015990
6823670 - 6838774
15105