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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6886270_6886435_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6886270 - 6886435
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
TGGCACTGAGGC
Flanking Amino Acid:
NKEKQELQEKLQALQSQLEF
Intron Amino Acid Position:
1835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
68.3
0.41
0.9
61.4
35
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
39.9
-0.7
1.9
46.89
41.5

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336
ENSAPLT00000015221
6886051 - 6934386
48336
ENSAPLT00000025662
6886051 - 6934386
48336