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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6886520_6886592_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6886520 - 6886592
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
GCCCCGCTAACA
Flanking Amino Acid:
MKKHKAAVAQASRDLAQMND
Intron Amino Acid Position:
1807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
57.1
0.18
1.1
59
36
Major PPT
76.3
0.59
0.8
69.4
31.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
44.2
-0.4
2.3
54.12
44.1

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025662
6886051 - 6934386
48336
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336
ENSAPLT00000015221
6886051 - 6934386
48336