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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6886710_6886912_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6886710 - 6886912
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGGCAC
U12 Branch Point Sequence:
CTGTTTTTCCCC
Flanking Amino Acid:
IDDLSKAKAALEEQLSRLQR
Intron Amino Acid Position:
1768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
72.7
38.8
Major BPS
39.9
-0.6
1.4
40.8
41.4
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
36.2
-1.6
3.3
53.7
43.8
Minor BPS
38.4
-0.9
3.5
56.36
43.3

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025662
6886051 - 6934386
48336
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336
ENSAPLT00000015221
6886051 - 6934386
48336