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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6887027_6887120_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6887027 - 6887120
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCG
5'SS Class:
major
3'SS Sequence:
CATGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
GGGTGCTGAGCC
Flanking Amino Acid:
KREIAQLKNQLEESEFTCAA
Intron Amino Acid Position:
1730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
62.3
43.9
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
69.5
0.44
0.9
62.3
34.3
Minor 5ss
27.7
-2.6
2.9
32.5
42.3
Minor BPS
44.5
-0.4
2.1
53.03
44

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022537
6886051 - 6934386
48336
ENSAPLT00000015221
6886051 - 6934386
48336
ENSAPLT00000025662
6886051 - 6934386
48336
ENSAPLT00000025432
6886051 - 6934386
48336