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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6887268_6887342_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6887268 - 6887342
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAC
5'SS Class:
major
3'SS Sequence:
TTTCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCACCAC
U12 Branch Point Sequence:
GTGCCTGGCACG
Flanking Amino Acid:
ESKLSAVSDQANQRDFETEK
Intron Amino Acid Position:
1681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
63.9
42.4
Major BPS
47.3
-0.1
1.3
54.7
40.3
Major PPT
86.5
0.82
0.7
81.3
23.7
Minor 5ss
29.7
-2.3
3.5
40.5
46
Minor BPS
37.1
-1.1
2.3
42
42.9

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336
ENSAPLT00000015221
6886051 - 6934386
48336
ENSAPLT00000025662
6886051 - 6934386
48336