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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6890005_6890101_R

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6890005 - 6890101
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGTGG
5'SS Class:
major
3'SS Sequence:
GCCCCCCGCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCACAG
U12 Branch Point Sequence:
TCGCCCACCACA
Flanking Amino Acid:
LNGELDDDDSGGEWRLKYER
Intron Amino Acid Position:
1406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
52.4
46.9
Major BPS
43
-0.4
1.4
48.6
36.6
Major PPT
59.7
0.22
0.9
52.3
31.2
Minor 5ss
40.6
-1
3.4
56
48.2
Minor BPS
42.7
-0.5
2.1
53.99
44.2

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336
ENSAPLT00000015221
6886051 - 6934386
48336
ENSAPLT00000025662
6886051 - 6934386
48336