About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6894125_6894205_R


Intron Information:

Intron Rank:
18

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
6894125 - 6894205

Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAA|GTGAGTGGG

5'SS Class:
major

3'SS Sequence:
CCGTGCCCCGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GGGTGAT

U12 Branch Point Sequence:
TTGGGGGTGACG

Flanking Amino Acid:
NASVLLQESQKKVISSLFAG

Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.8
0.68
1
66
40.1

Major BPS
49.3
-0
1.5
42.8
49.4

Major PPT
65.2
0.34
0.9
57.7
33.3

Minor 5ss
28.4
-2.5
3.1
31.4
36.6

Minor BPS
35.1
-1.3
2.8
45.37
47.6

Associated Gene:

Gene:
MYO18A

Ensembl Gene ID:

Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

6886051 - 6934386
48336

6886051 - 6934386
48336

6886051 - 6934386
48336

6886051 - 6934386
48336