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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6894594_6895439_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6894594 - 6895439
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
GTGTCACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCAAC
U12 Branch Point Sequence:
GTCCCGGTACCA
Flanking Amino Acid:
TVDQPSHQALVRSLARTDEA
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
54.2
0.1
1.2
62.7
32.2
Major PPT
66.5
0.37
0.9
58.5
37.5
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
38.9
-0.8
2.6
52.93
45.2

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015221
6886051 - 6934386
48336
ENSAPLT00000025662
6886051 - 6934386
48336
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336