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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6896359_6896440_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6896359 - 6896440
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCGC
5'SS Class:
major
3'SS Sequence:
TCCCCTCCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
TGGTTGGGGACA
Flanking Amino Acid:
PEEQGMGDGTGPKLTALECL
Intron Amino Acid Position:
782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
60.9
40.7
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
68.1
0.41
0.9
61.3
35
Minor 5ss
29.7
-2.3
3.5
41.4
45.3
Minor BPS
37.7
-0.9
2.5
50.68
41.1

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015221
6886051 - 6934386
48336
ENSAPLT00000025662
6886051 - 6934386
48336
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336