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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6898524_6898692_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6898524 - 6898692
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCTGCCT
5'SS Class:
weak_major
3'SS Sequence:
TTGCTCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAT
U12 Branch Point Sequence:
CCTGTGCCAATG
Flanking Amino Acid:
NVFGIVPLAKPEEKQKAAQQ
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.1
0.1
1.4
50.9
45.5
Major BPS
56.7
0.17
1.4
64.7
41
Major PPT
78.2
0.63
0.8
73.3
31.6
Minor 5ss
27.8
-2.5
3.3
40.9
44.8
Minor BPS
33.9
-1.3
2.2
34.67
41

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015221
6886051 - 6934386
48336
ENSAPLT00000025662
6886051 - 6934386
48336
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336