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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6898757_6898836_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6898757 - 6898836
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
TTTCCCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACCAAC
U12 Branch Point Sequence:
TTTCCCCCAACA
Flanking Amino Acid:
YLLACPDSALRTELHFNHLA
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
60
46.2
Major BPS
44.6
-0.3
1.3
48.4
34.6
Major PPT
75.5
0.57
0.8
70.6
28.9
Minor 5ss
36.5
-1.5
3.2
48.4
47.2
Minor BPS
60.7
0.33
1.9
78.63
37.1

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025662
6886051 - 6934386
48336
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336
ENSAPLT00000015221
6886051 - 6934386
48336