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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6900138_6900212_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6900138 - 6900212
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
GCCCCGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCCGCCTGACCC
Flanking Amino Acid:
LEVEEDDVEKANPPSCDRVE
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
57.9
46.7
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
63.6
0.31
0.9
52.9
36.7
Minor 5ss
29.7
-2.3
3.4
38.8
46.5
Minor BPS
45.7
-0.3
1.9
50.11
46.6

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025662
6886051 - 6934386
48336
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336
ENSAPLT00000015221
6886051 - 6934386
48336