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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6900323_6900392_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6900323 - 6900392
Intron Length:
70

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CGTGCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
CCCCACTGAGCC
Flanking Amino Acid:
WLVHKDGFSLGSQLRPEEAS
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
42.7
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
69.1
0.43
0.9
61.5
34.9
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
42.3
-0.6
1.8
45.54
42.7

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015221
6886051 - 6934386
48336
ENSAPLT00000025662
6886051 - 6934386
48336
ENSAPLT00000025432
6886051 - 6934386
48336
ENSAPLT00000022537
6886051 - 6934386
48336