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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6901868_6909318_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6901868 - 6909318
Intron Length:
7451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCGCTGCTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTCTCT
Flanking Amino Acid:
GEGTRRATWDLDPAASAPAP
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.3
36.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
66.7
0.38
1.1
65.1
41.2
Minor 5ss
33.1
-1.9
2.8
41.4
38.2
Minor BPS
47.9
-0
3.6
87.39
38.7

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022537
6886051 - 6934386
48336
ENSAPLT00000025662
6886051 - 6934386
48336
ENSAPLT00000025432
6886051 - 6934386
48336