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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6923924_6924562_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6923924 - 6924562
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTTCCATCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCCCCCTCACCC
Flanking Amino Acid:
LMSFRPVCSANHKESKITVF
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
60.6
38.8
Major BPS
65
0.37
1.3
76.1
38
Major PPT
78.2
0.64
0.8
70
35.1
Minor 5ss
30.4
-2.2
3.1
40.5
38.7
Minor BPS
49.1
-0
1.9
59.94
45.2

Associated Gene:

Gene:
CRYBA1
Ensembl Gene ID:
ENSAPLG00000023591
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025769
6921341 - 6925072
3732