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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6934436_6935032_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6934436 - 6935032
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
TTGCCGAAAACT
Flanking Amino Acid:
METIWNLQKQDPKRIITYDE
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
85.1
0.79
0.8
76.7
37.4
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
44.3
-0.3
2.5
70.21
46.3

Associated Gene:

Gene:
MYO18A
Ensembl Gene ID:
ENSAPLG00000014555
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013656
6934381 - 6946075
11695