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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6947634_6951859_R

Intron Information:

Intron Rank:
142999
Intron Class:
major
Intron Phase:
Intron Coordinates:
6947634 - 6951859
Intron Length:
4226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTCTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
76.3
0.59
0.9
77.5
36.7
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
56.3
0.28
1.6
71.97
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024290
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046434
6946476 - 6952228
5753