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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6951941_6952047_R

Intron Information:

Intron Rank:
143000
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
6951941 - 6952047
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCTTCGT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTCCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAATTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.6
0.23
1.4
56.6
47.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.6
84.5
23.5
Minor 5ss
30.4
-2.2
3
43
43.6
Minor BPS
59.6
0.38
1.5
73.17
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024290
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046434
6946476 - 6952228
5753