Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6954754_6955145_R

Intron Information:

Intron Rank:

141195

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6954754 - 6955145

Intron Length:

392

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTAAGCTTT

5'SS Class:

weak_major

3'SS Sequence:

AAATTTCACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

TCCTCATTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

72.5

39.9

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

65.3

0.34

58.8

41.1

Minor 5ss

53.8

0.13

2.7

70.1

41.4

Minor BPS

66.4

0.49

1.6

71.1

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023308

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020182

6954198 - 6956372

2175