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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6965096_6965221_R

Intron Information:

Intron Rank:
138920
Intron Class:
major
Intron Phase:
Intron Coordinates:
6965096 - 6965221
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTTGT
5'SS Class:
major
3'SS Sequence:
GTTTTTGCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
41.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.9
0.54
0.9
69.1
37.1
Minor 5ss
40.7
-1
3.2
55
44.5
Minor BPS
56
0.27
2
77.64
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022250
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026126
6958571 - 6965613
7043