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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6993668_6997444_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6993668 - 6997444
Intron Length:
3777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTGAAGAAACT
Flanking Amino Acid:
GHGSFGAVYFARDVRTNEVV
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
70.9
39.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
83.2
0.75
0.9
80.5
37
Minor 5ss
38.7
-1.3
2.8
51.8
39.1
Minor BPS
41.3
-0.5
2.6
69.75
46.7

Associated Gene:

Gene:
TAOK1
Ensembl Gene ID:
ENSAPLG00000012249
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012820
6993441 - 7027440
34000