About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6997517_7000428_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6997517 - 7000428
Intron Length:
2912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATGAAGT
Flanking Amino Acid:
MSYSGKQSNEKWQDIIKEVK
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
90.4
0.91
0.6
85.1
22.6
Minor 5ss
41.2
-1
2.5
51.4
45.1
Minor BPS
55.7
0.26
2
79.31
42.1

Associated Gene:

Gene:
TAOK1
Ensembl Gene ID:
ENSAPLG00000012249
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012820
6993441 - 7027440
34000