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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7003238_7004024_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7003238 - 7004024
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTATAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTCTATAACC
Flanking Amino Acid:
AYLHSHNMIHRDIKAGNILL
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
67.6
0.4
1
60.7
43.6
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
71.7
0.66
1.5
80.73
33.2

Associated Gene:

Gene:
TAOK1
Ensembl Gene ID:
ENSAPLG00000012249
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012820
6993441 - 7027440
34000