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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7004139_7004951_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7004139 - 7004951
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGAGCA
Flanking Amino Acid:
PANSFVGTPYWMAPEVILAM
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.8
40.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.5
0.69
0.8
78.6
34.4
Minor 5ss
37.3
-1.4
3.1
44.3
44.6
Minor BPS
49.2
-0
1.9
67.93
37.9

Associated Gene:

Gene:
TAOK1
Ensembl Gene ID:
ENSAPLG00000012249
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012820
6993441 - 7027440
34000