Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7005044_7007593_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7005044 - 7007593

Intron Length:

2550

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTGTGTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAA

U12 Branch Point Sequence:

ATCTCCCTATAT

Flanking Amino Acid:

WSLGITCIELAERKPPLFNM

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.13

0.6

93.1

14.6

Major BPS

69.8

0.49

70.3

31.8

Major PPT

76.6

0.6

0.9

72.9

37.4

Minor 5ss

41.9

-0.9

2.9

57.8

46.8

Minor BPS

49.7

0.05

72.58

43.8

Associated Gene:

Gene:

TAOK1

Ensembl Gene ID:

ENSAPLG00000012249

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012820

6993441 - 7027440

34000