About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7017310_7017758_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7017310 - 7017758
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GCCGTCCTGTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTCCAATAAGC
Flanking Amino Acid:
HNLEQDLVREELNKRQTQKD
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
80
0.75
1
78.6
31
Major PPT
59.7
0.22
1
57.9
38.5
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
46.5
-0.2
2.1
62.25
42.8

Associated Gene:

Gene:
TAOK1
Ensembl Gene ID:
ENSAPLG00000012249
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012820
6993441 - 7027440
34000