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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7023132_7026978_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7023132 - 7026978
Intron Length:
3847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAC
U12 Branch Point Sequence:
TGCTACAGACTC
Flanking Amino Acid:
SLRRALLEQKIEEEMLALQN
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.9
Major BPS
56.4
0.16
1
52.6
34.2
Major PPT
90.9
0.92
0.6
84.7
30.2
Minor 5ss
36.7
-1.5
3.1
47.6
47.9
Minor BPS
40.4
-0.7
2
49.96
40.3

Associated Gene:

Gene:
TAOK1
Ensembl Gene ID:
ENSAPLG00000012249
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012820
6993441 - 7027440
34000