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Intron Name: Anas_platyrhynchos_platyrhynchos_20_7076351_7078114_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7076351 - 7078114

Intron Length:

1764

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTGCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTCTGTTTAATG

Flanking Amino Acid:

NDTYKFISKAKKNGSKCLVH

Intron Amino Acid Position:

390

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

84.6

33.2

Major BPS

81.8

0.79

1.1

34.5

Major PPT

76.8

0.6

0.8

69.5

36.8

Minor 5ss

41.9

-0.9

3.1

59.6

38.8

Minor BPS

0.21

1.8

66.31

42.6

Associated Gene:

Gene:

SSH2

Ensembl Gene ID:

ENSAPLG00000011550

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012055

7067892 - 7110691

42800

ENSAPLT00000012050

7067892 - 7132389

64498