Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7079517_7081835_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7079517 - 7081835

Intron Length:

2319

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

GCTGGCTGATGT

Flanking Amino Acid:

PTQIFDHVFLGSEWNASNLE

Intron Amino Acid Position:

326

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.5

41.9

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

84.1

0.77

0.8

78.1

30.7

Minor 5ss

-1.4

47.2

42.5

Minor BPS

38.4

-0.8

2.2

52.81

47.9

Associated Gene:

Gene:

SSH2

Ensembl Gene ID:

ENSAPLG00000011550

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012050

7067892 - 7132389

64498

ENSAPLT00000012055

7067892 - 7110691

42800