Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7097260_7110635_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7097260 - 7110635

Intron Length:

13376

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGAGTAGC

5'SS Class:

major

3'SS Sequence:

TCTTCCCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

CCTGGCTCACTG

Flanking Amino Acid:

AVISQGAIAQLISESFLTVK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.3

0.48

1.1

65.6

40.2

Major BPS

52.1

0.05

1.3

41.8

Major PPT

86.6

0.82

0.7

24.1

Minor 5ss

33.5

-1.9

2.8

46.7

41.7

Minor BPS

38.1

-1

2.1

38.16

45.6

Associated Gene:

Gene:

SSH2

Ensembl Gene ID:

ENSAPLG00000011550

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012055

7067892 - 7110691

42800