About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_712467_717003_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
712467 - 717003
Intron Length:
4537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TGATATTTACTC
Flanking Amino Acid:
RNTTQKSKSPDLHLLVDVAC
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
83.1
0.74
0.7
77
31.7
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
49.6
-0
1.7
60.68
38.8

Associated Gene:

Gene:
HSF5
Ensembl Gene ID:
ENSAPLG00000012874
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013398
712399 - 740179
27781