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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7153031_7153136_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7153031 - 7153136
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
75.1
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.8
85.9
32.8
Minor 5ss
43.2
-0.8
3.3
64.9
46.4
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
EFCAB5
Ensembl Gene ID:
ENSAPLG00000011243
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032701
7152792 - 7189414
36623
ENSAPLT00000011715
7152792 - 7189414
36623