About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7153310_7156326_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7153310 - 7156326
Intron Length:
3017

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCTGAGAA
5'SS Class:
major
3'SS Sequence:
TTCTTTATCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
58.5
43.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.6
0.78
0.8
80.3
30.3
Minor 5ss
20.9
-3.4
3.8
29.2
43.4
Minor BPS
71.8
0.68
1.5
79.99
36.1

Associated Gene:

Gene:
EFCAB5
Ensembl Gene ID:
ENSAPLG00000011243
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032701
7152792 - 7189414
36623
ENSAPLT00000011715
7152792 - 7189414
36623