Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7156903_7159954_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7156903 - 7159954

Intron Length:

3052

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAGAG

5'SS Class:

strong_major

3'SS Sequence:

CTATGTCCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAG

U12 Branch Point Sequence:

ATTGTTCTAAGT

Flanking Amino Acid:

KTEMADTAPERLARMKAEAK

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.8

71.2

34.6

Major BPS

70.6

0.51

1.5

77.9

34.9

Major PPT

76.3

0.59

0.9

69.1

36.9

Minor 5ss

24.3

-3

3.1

28.4

43.8

Minor BPS

47.9

-0

69.91

41.6

Associated Gene:

Gene:

EFCAB5

Ensembl Gene ID:

ENSAPLG00000011243

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032701

7152792 - 7189414

36623

ENSAPLT00000011715

7152792 - 7189414

36623