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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7160776_7164734_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7160776 - 7164734
Intron Length:
3959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATCTGTTAATT
Flanking Amino Acid:
VASAPMDVREAIYDRKLEII
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.5
0.53
0.9
67.7
42.7
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
58.3
0.34
2
78.1
38.4

Associated Gene:

Gene:
EFCAB5
Ensembl Gene ID:
ENSAPLG00000011243
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032701
7152792 - 7189414
36623
ENSAPLT00000011715
7152792 - 7189414
36623