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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7164806_7168106_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7164806 - 7168106
Intron Length:
3301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTCTCTCCATA
Flanking Amino Acid:
QKVNIDEFTEYVHSYTENFS
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
80.9
0.69
0.7
76.9
25.3
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
49.5
-0
1.9
68.51
38.2

Associated Gene:

Gene:
EFCAB5
Ensembl Gene ID:
ENSAPLG00000011243
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032701
7152792 - 7189414
36623
ENSAPLT00000011715
7152792 - 7189414
36623