Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7173177_7173624_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7173177 - 7173624

Intron Length:

448

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

TGCTTCAAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAT

U12 Branch Point Sequence:

ATTGCTTCAAAA

Flanking Amino Acid:

KQAAESSDAEDAPVAEAVKE

Intron Amino Acid Position:

467

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.88

0.8

76.8

33.7

Major BPS

0.65

1.1

77.4

37.3

Major PPT

64.4

0.32

59.7

39.7

Minor 5ss

27.4

-2.6

2.7

30.4

Minor BPS

54.2

0.13

1.7

67.25

39.1

Associated Gene:

Gene:

EFCAB5

Ensembl Gene ID:

ENSAPLG00000011243

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032701

7152792 - 7189414

36623

ENSAPLT00000011715

7152792 - 7189414

36623